Citation metrics
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- | =Citation Data= | + | ==Citation Data== |
- | This page provides data on how frequently MolMovDB-related work by the Gerstein lab has been cited in the literature. Note that it was last updated in | + | This page provides data on how frequently MolMovDB-related work by the Gerstein lab has been cited in the literature. Note that it was last updated in Jan 2012. |
:{|class="wikitable sortable" border="1" cellspacing="0" cellpadding="10" | :{|class="wikitable sortable" border="1" cellspacing="0" cellpadding="10" | ||
|- bgcolor="lightsteelblue" | |- bgcolor="lightsteelblue" | ||
- | !Paper Title!!Year Published!!class="unsortable"|No. Times Cited (as of 6/2011) | + | !Paper Title & Link!!Year Published!!class="unsortable"|No. Times Cited (as of 6/2011) |
- | |-style="height: | + | |-style="height: 50px;" |
- | |style="width:65%"|[http://papers.gersteinlab.org/papers/3v/index.html '''3V: cavity, channel and cleft volume calculator and extractor''']||style="width:15%; text-align:center;"|2010||style="text-align:center;"| | + | |style="width:65%"|[http://papers.gersteinlab.org/papers/dynasin/index.html '''Integration of protein motions with molecular networks reveals different mechanisms for permanent and transient interactions''']||style="width:15%; text-align:center;"|2011||style="text-align:center;"|1 |
- | |-style="height: | + | |-style="height: 50px;" |
- | |style="text-align: center;"|[http:// | + | |style="width:65%"|[http://papers.gersteinlab.org/papers/3v/index.html '''3V: cavity, channel and cleft volume calculator and extractor''']||style="width:15%; text-align:center;"|2010||style="text-align:center;"|9 |
- | |-style="height: | + | |-style="height: 50px;" |
- | |style="text-align: center;"|[http:// | + | |style="width:65%"|[http://papers.gersteinlab.org/papers/rigidfinder/index.html '''RigidFinder: a fast and sensitive method to detect rigid blocks in large macromolecular complexes''']||style="width:15%; text-align:center;"|2010||style="text-align:center;"|2 |
- | |-style="height: | + | |-style="height: 50px;" |
- | |style="text-align: center;"|[http:// | + | |style="width:65%"|[http://papers.gersteinlab.org/papers/packingeff/index.html '''Relating protein conformational changes to packing efficiency and disorder''']||style="width:15%; text-align:center;"|2009||style="text-align:center;"|2 |
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/stonehinge/index.html '''StoneHinge: hinge prediction by network analysis of individual protein structures''']||style="width:15%; text-align:center;"|2009||style="text-align:center;"|11 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/hingemaster/index.html '''HingeMaster: normal mode hinge prediction approach and integration of complementary predictors''']||style="width:15%; text-align:center;"|2008||style="text-align:center;"|18 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/flexoracle/index.html '''FlexOracle: predicting flexible hinges by identification of stable domains''']||style="width:15%; text-align:center;"|2007||style="text-align:center;"|21 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/HingeAtlas/index.html '''Hinge Atlas: relating protein sequence to sites of structural flexibility''']||style="width:15%; text-align:center;"|2007||style="text-align:center;"|16 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/molmovdb-update-nar/index.html '''The Database of Macromolecular Motions: new features added at the decade mark''']||style="width:15%; text-align:center;"|2006||style="text-align:center;"|93 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/hit/index.html '''Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins''']||style="width:15%; text-align:center;"|2006||style="text-align:center;"|9 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/ribotunnel/index.html '''The geometry of the ribosomal polypeptide exit tunnel''']||style="width:15%; text-align:center;"|2006||style="text-align:center;"|113 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/nmodes2/index.html '''Normal modes for predicting protein motions: a comprehensive database assessment and associated Web tool''']||style="width:15%; text-align:center;"|2005||style="text-align:center;"|81 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/nucprot/index.html '''Calculation of standard atomic volumes for RNA and comparison with proteins: RNA is packed more tightly''']||style="width:15%; text-align:center;"|2005||style="text-align:center;"|53 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/protconf-cosb/index.html '''Conformational changes associated with protein-protein interactions''']||style="width:15%; text-align:center;"|2004||style="text-align:center;"|138 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/largemot-cocb/index.html '''Exploring the range of protein flexibility, from a structural proteomics perspective''']||style="width:15%; text-align:center;"|2004||style="text-align:center;"|57 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/3dhmm/index.html '''Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures''']||style="width:15%; text-align:center;"|2004||style="text-align:center;"|31 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/mots-mie/index.html '''Tools and databases to analyze protein flexibility; approaches to mapping implied features onto sequences''']||style="width:15%; text-align:center;"|2003||style="text-align:center;"|11 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/molmovdb2/index.html '''MolMovDB: analysis and visualization of conformational change and structural flexibility''']||style="width:15%; text-align:center;"|2003||style="text-align:center;"|131 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/nmodes/index.html '''Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic''']||style="width:15%; text-align:center;"|2002||style="text-align:center;"|158 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/vol-sensanal-bioinfo/index.html '''Calculations of protein volumes: sensitivity analysis and parameter database''']||style="width:15%; text-align:center;"|2002||style="text-align:center;"|42 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/min-atomtypes-bioinfo/index.html '''Determining the minimum number of types necessary to represent the sizes of protein atoms''']||style="width:15%; text-align:center;"|2001||style="text-align:center;"|18 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/geom-inttab/index.html '''Protein Geometry: Distances, Areas, and Volumes''']||style="width:15%; text-align:center;"|2001||style="text-align:center;"|10 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/morphs-nar/index.html '''The morph server: a standardized system for analyzing and visualizing macromolecular motions in a database framework''']||style="width:15%; text-align:center;"|2000||style="text-align:center;"|131 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/std-vols-jmb/index.html '''The packing density in proteins: standard radii and volumes''']||style="width:15%; text-align:center;"|1999||style="text-align:center;"|313 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/protmot-science/index.html '''Perspectives: signal transduction. Proteins in motion''']||style="width:15%; text-align:center;"|1999||style="text-align:center;"|16 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/molmovdb-nar/index.html '''A database of macromolecular motions''']||style="width:15%; text-align:center;"|1998||style="text-align:center;"|246 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/surfpack-pnas/index.html '''Packing at the protein-water interface''']||style="width:15%; text-align:center;"|1996||style="text-align:center;"|159 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/structmovprot/index.html '''Structural mechanisms for domain movements in proteins''']||style="width:15%; text-align:center;"|1994||style="text-align:center;"|578 | ||
+ | |-style="height: 50px;" | ||
+ | |style="width:65%"|[http://papers.gersteinlab.org/papers/volfold-structure/index.html '''Volume changes on protein folding''']||style="width:15%; text-align:center;"|1994||style="text-align:center;"|346 | ||
|} | |} |
Current revision
Citation Data
This page provides data on how frequently MolMovDB-related work by the Gerstein lab has been cited in the literature. Note that it was last updated in Jan 2012.