http://www2.molmovdb.org/wiki/info/index.php?title=Guidance_of_refreshing_Molmovdb&action=history&feed=atomGuidance of refreshing Molmovdb - Revision history2024-03-21T14:39:55ZRevision history for this page on the wikiMediaWiki 1.11.2http://www2.molmovdb.org/wiki/info/index.php?title=Guidance_of_refreshing_Molmovdb&diff=342&oldid=prevPublic: /* Guidance of refreshing Molmovdb by BW */2017-06-29T03:24:22Z<p><span class="autocomment">Guidance of refreshing Molmovdb by BW</span></p>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>==Guidance of refreshing Molmovdb <del style="color: red; font-weight: bold; text-decoration: none;">by BW</del>==</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>==Guidance of refreshing Molmovdb==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>0. Set up your user account on gw.gersteinlab.org and get access to root@molmovdb.org (setup your login password with MF)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>0. Set up your user account on gw.gersteinlab.org and get access to root@molmovdb.org (setup your login password with MF)</div></td></tr>
</table>Publichttp://www2.molmovdb.org/wiki/info/index.php?title=Guidance_of_refreshing_Molmovdb&diff=341&oldid=prevPublic: /* Guidance of refreshing Molmovdb by BW */2017-06-29T03:23:56Z<p><span class="autocomment">Guidance of refreshing Molmovdb by BW</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 03:23, 29 June 2017</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>0. Set up your user account on gw.gersteinlab.org and get access to root@molmovdb.org (setup your login password with MF)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>0. Set up your user account on gw.gersteinlab.org and get access to root@molmovdb.org (setup your login password with MF)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>1. Set up Passwordless Login to avoid typing password when doing file updates from gw to MMDB server. For this purpose, you need to generate your RSA private key on your gw, and follow “Passwordless Login” tutorial from GersteinLab Wiki to copy this id_rsa.pub to MMDB server. For detailed instruction, go to http://wiki.gersteinlab.org/labinfo/Passwordless_Login.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>1. Set up Passwordless Login to avoid typing password when doing file updates from gw to MMDB server. For this purpose, you need to generate your RSA private key on your gw, and follow “Passwordless Login” tutorial from GersteinLab Wiki to copy this id_rsa.pub to MMDB server. For detailed instruction, go to<ins style="color: red; font-weight: bold; text-decoration: none;">: </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>http://wiki.gersteinlab.org/labinfo/Passwordless_Login.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>2. Have the upgrade files ready from archive:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>2. Have the upgrade files ready from archive:</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><syntaxhighlight>User_id@gw.gersteinlab.org:/nfs/archive/html/proj/molmovdb/upgrade</syntaxhighlight>. All files for upgrading purpose need to be placed in the upgrade. </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>3. Run auto_upgrade.sh to rsync the files in upgrade folder into MMDB. Note that at this point MF should have a freeze copy of MMDB from an earlier time spot (roll-back) to replace the broken VM. Auto_upgrade.sh will automatically replace the corresponded files that need updates with the old ones. The target directory is root@molmovdb.org:/home/molmovdb/server/htdocs/</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">User_id@gw.gersteinlab.org:/nfs/archive/html/proj/molmovdb/upgrade. </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">All files for upgrading purpose need to be placed in the upgrade. </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>3. Run auto_upgrade.sh to rsync the files in upgrade folder into MMDB. Note that at this point MF should have a freeze copy of MMDB from an earlier time spot (roll-back) to replace the broken VM. Auto_upgrade.sh will automatically replace the corresponded files that need updates with the old ones. The target directory is<ins style="color: red; font-weight: bold; text-decoration: none;">: </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>root@molmovdb.org:/home/molmovdb/server/htdocs/<ins style="color: red; font-weight: bold; text-decoration: none;">.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>4. Re-do step #3 if MMDB is down again, and re-do step #2 if there is something new that need to be upgraded.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>4. Re-do step #3 if MMDB is down again, and re-do step #2 if there is something new that need to be upgraded.</div></td></tr>
</table>Publichttp://www2.molmovdb.org/wiki/info/index.php?title=Guidance_of_refreshing_Molmovdb&diff=340&oldid=prevPublic: /* Guidance of refreshing Molmovdb by BW */2017-06-29T03:22:47Z<p><span class="autocomment">Guidance of refreshing Molmovdb by BW</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 03:22, 29 June 2017</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>2. Have the upgrade files ready from archive:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>2. Have the upgrade files ready from archive:</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>User_id@gw.gersteinlab.org:/nfs/archive/html/proj/molmovdb/upgrade. All files for upgrading purpose need to be placed in the upgrade. </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><syntaxhighlight></ins>User_id@gw.gersteinlab.org:/nfs/archive/html/proj/molmovdb/upgrade<ins style="color: red; font-weight: bold; text-decoration: none;"></syntaxhighlight></ins>. All files for upgrading purpose need to be placed in the upgrade. </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>3. Run auto_upgrade.sh to rsync the files in upgrade folder into MMDB. Note that at this point MF should have a freeze copy of MMDB from an earlier time spot (roll-back) to replace the broken VM. Auto_upgrade.sh will automatically replace the corresponded files that need updates with the old ones. The target directory is root@molmovdb.org:/home/molmovdb/server/htdocs/</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>3. Run auto_upgrade.sh to rsync the files in upgrade folder into MMDB. Note that at this point MF should have a freeze copy of MMDB from an earlier time spot (roll-back) to replace the broken VM. Auto_upgrade.sh will automatically replace the corresponded files that need updates with the old ones. The target directory is root@molmovdb.org:/home/molmovdb/server/htdocs/</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>4. Re-do step #3 if MMDB is down again, and re-do step #2 if there is something new that need to be upgraded.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>4. Re-do step #3 if MMDB is down again, and re-do step #2 if there is something new that need to be upgraded.</div></td></tr>
</table>Publichttp://www2.molmovdb.org/wiki/info/index.php?title=Guidance_of_refreshing_Molmovdb&diff=339&oldid=prevPublic: /* Guidance of refreshing Molmovdb by BW */2017-06-29T03:19:40Z<p><span class="autocomment">Guidance of refreshing Molmovdb by BW</span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 03:19, 29 June 2017</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>0. Set up your user account on gw.gersteinlab.org and get access to root@molmovdb.org (setup your login password with MF)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>0. Set up your user account on gw.gersteinlab.org and get access to root@molmovdb.org (setup your login password with MF)</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>1. Set up Passwordless Login to avoid typing password when doing file updates from gw to MMDB server. For this purpose, you need to generate your RSA private key on your gw, and follow “Passwordless Login” tutorial from GersteinLab Wiki to copy this id_rsa.pub to MMDB server. For detailed instruction, go to http://wiki.gersteinlab.org/labinfo/Passwordless_Login.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>1. Set up Passwordless Login to avoid typing password when doing file updates from gw to MMDB server. For this purpose, you need to generate your RSA private key on your gw, and follow “Passwordless Login” tutorial from GersteinLab Wiki to copy this id_rsa.pub to MMDB server. For detailed instruction, go to http://wiki.gersteinlab.org/labinfo/Passwordless_Login.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>2. Have the upgrade files ready from archive:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>2. Have the upgrade files ready from archive:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>User_id@gw.gersteinlab.org:/nfs/archive/html/proj/molmovdb/upgrade. All files for upgrading purpose need to be placed in the upgrade. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>User_id@gw.gersteinlab.org:/nfs/archive/html/proj/molmovdb/upgrade. All files for upgrading purpose need to be placed in the upgrade. </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>3. Run auto_upgrade.sh to rsync the files in upgrade folder into MMDB. Note that at this point MF should have a freeze copy of MMDB from an earlier time spot (roll-back) to replace the broken VM. Auto_upgrade.sh will automatically replace the corresponded files that need updates with the old ones. The target directory is root@molmovdb.org:/home/molmovdb/server/htdocs/</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>3. Run auto_upgrade.sh to rsync the files in upgrade folder into MMDB. Note that at this point MF should have a freeze copy of MMDB from an earlier time spot (roll-back) to replace the broken VM. Auto_upgrade.sh will automatically replace the corresponded files that need updates with the old ones. The target directory is root@molmovdb.org:/home/molmovdb/server/htdocs/</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>4. Re-do step #3 if MMDB is down again, and re-do step #2 if there is something new that need to be upgraded.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>4. Re-do step #3 if MMDB is down again, and re-do step #2 if there is something new that need to be upgraded.</div></td></tr>
</table>Publichttp://www2.molmovdb.org/wiki/info/index.php?title=Guidance_of_refreshing_Molmovdb&diff=338&oldid=prevPublic: New page: ==Guidance of refreshing Molmovdb by BW== 0. Set up your user account on gw.gersteinlab.org and get access to root@molmovdb.org (setup your login password with MF) 1. Set up Passwordless ...2017-06-29T03:18:34Z<p>New page: ==Guidance of refreshing Molmovdb by BW== 0. Set up your user account on gw.gersteinlab.org and get access to root@molmovdb.org (setup your login password with MF) 1. Set up Passwordless ...</p>
<p><b>New page</b></p><div>==Guidance of refreshing Molmovdb by BW==<br />
<br />
0. Set up your user account on gw.gersteinlab.org and get access to root@molmovdb.org (setup your login password with MF)<br />
1. Set up Passwordless Login to avoid typing password when doing file updates from gw to MMDB server. For this purpose, you need to generate your RSA private key on your gw, and follow “Passwordless Login” tutorial from GersteinLab Wiki to copy this id_rsa.pub to MMDB server. For detailed instruction, go to http://wiki.gersteinlab.org/labinfo/Passwordless_Login.<br />
2. Have the upgrade files ready from archive:<br />
User_id@gw.gersteinlab.org:/nfs/archive/html/proj/molmovdb/upgrade. All files for upgrading purpose need to be placed in the upgrade. <br />
3. Run auto_upgrade.sh to rsync the files in upgrade folder into MMDB. Note that at this point MF should have a freeze copy of MMDB from an earlier time spot (roll-back) to replace the broken VM. Auto_upgrade.sh will automatically replace the corresponded files that need updates with the old ones. The target directory is root@molmovdb.org:/home/molmovdb/server/htdocs/<br />
4. Re-do step #3 if MMDB is down again, and re-do step #2 if there is something new that need to be upgraded.</div>Public