Hinge Analysis
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We have a number of resources available for hinge analysis. | We have a number of resources available for hinge analysis. | ||
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- | [http://stonehinge.molmovdb.org/ StoneHinge '''''(currently under construction)''''']: StoneHinge is a hinge prediction algorithm that performs a network-based analysis of a single protein structure to detect hinge regions. StoneHinge incorporates both ProFlex, which uses the FIRST constraint counting algorithm, and DomDecomp, which uses Gaussian Normal Mode analysis. | ||
[http://molmovdb.org/cgi-bin/submit-flexoracle.cgi HingeMaster]: The new HingeMaster server predicts hinge locations in single protein structures. The algorithm combines FlexOracle, TLSMD, StoneHingeP and NSHP hinge predictors for maximum accuracy | [http://molmovdb.org/cgi-bin/submit-flexoracle.cgi HingeMaster]: The new HingeMaster server predicts hinge locations in single protein structures. The algorithm combines FlexOracle, TLSMD, StoneHingeP and NSHP hinge predictors for maximum accuracy | ||
[http://rigidfinder.molmovdb.org/ RigidFinder]: performs comparison of two protein conformations with the aim of identifying movable rigid regions. | [http://rigidfinder.molmovdb.org/ RigidFinder]: performs comparison of two protein conformations with the aim of identifying movable rigid regions. | ||
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+ | [http://stonehinge.molmovdb.org/ StoneHinge '''''(currently under construction)''''']: StoneHinge is a hinge prediction algorithm that performs a network-based analysis of a single protein structure to detect hinge regions. StoneHinge incorporates both ProFlex, which uses the FIRST constraint counting algorithm, and DomDecomp, which uses Gaussian Normal Mode analysis. | ||
[http://tace.molmovdb.org/tacehome.html TACE] calculates pseudo-torsion angle changes in backbone structures given a pair of conformations. | [http://tace.molmovdb.org/tacehome.html TACE] calculates pseudo-torsion angle changes in backbone structures given a pair of conformations. |
Revision as of 05:18, 18 April 2016
We have a number of resources available for hinge analysis.
HingeMaster: The new HingeMaster server predicts hinge locations in single protein structures. The algorithm combines FlexOracle, TLSMD, StoneHingeP and NSHP hinge predictors for maximum accuracy
RigidFinder: performs comparison of two protein conformations with the aim of identifying movable rigid regions.
StoneHinge (currently under construction): StoneHinge is a hinge prediction algorithm that performs a network-based analysis of a single protein structure to detect hinge regions. StoneHinge incorporates both ProFlex, which uses the FIRST constraint counting algorithm, and DomDecomp, which uses Gaussian Normal Mode analysis.
TACE calculates pseudo-torsion angle changes in backbone structures given a pair of conformations.