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* The [http://www.molmovdb.org/movies/gallery.html highlights] page showcases some of our best movies
* The [http://www.molmovdb.org/movies/gallery.html highlights] page showcases some of our best movies
* [[Help page]]
* [[Help page]]
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* [http://molmovdb.org/sets Collection of Sets of Motions]
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* [http://molmovdb.org/sets Collection of Sets of Motions] Database of morphs categorized into distinct sets.
== Servers ==
== Servers ==

Revision as of 22:19, 8 July 2008

MolMovDB and Associated Tools

Contents

Databases

  • Protein Motions
  • Movies: Thousands of morphs of transitions between PDB files, viewable through a Java applet or as MPEG or GIF movies. Most of these are submissions to the Morph Server by database users
  • The highlights page showcases some of our best movies
  • Help page
  • Collection of Sets of Motions Database of morphs categorized into distinct sets.

Servers

  • Morph Server: A web-based tool for generating and animating chemically realistic interpolations between two conformations. Now supports RNA, DNA, and multi-subunit complexes.
  • Morph Server FAQ
  • Analysis of helix interactions: Tools for interface analysis of interacting helices and a database of membrane proteins.
  • Normal mode analysis: This tool allows the user to upload a query structure (or choose it from the motions database), calculate its lowest frequency Normal Mode, build the movie of this vibration and compare it with the pre-calculated flexibility regions based on either supplied B-factors or multiple structural alignment for the corresponding fold family (for single-domain queries).
  • Hinge Analysis : HingeMaster is a resource for predicting the location of hinges in a protein structure.
  • Conformation Explorer : Resource for predicting the holo structure of a protein, and the protein motion, by providing a trajectory of PDB structures connecting the user input structure to the predicted holo structure.

Other Useful Resources

Publications

Personal tools