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* [http://helix.gersteinlab.org/ Analysis of helix interactions]: Tools for interface analysis of interacting helices and a database of membrane proteins
* [http://helix.gersteinlab.org/ Analysis of helix interactions]: Tools for interface analysis of interacting helices and a database of membrane proteins
* [http://molmovdb.org/nma/ Normal mode analysis]: This tool allows the user to upload a query structure (or choose it from the motions database), calculate its lowest frequency Normal Mode, build the movie of this vibration and compare it with the pre-calculated flexibility regions based on either supplied B-factors or multiple structural alignment for the corresponding fold family (for single-domain queries)
* [http://molmovdb.org/nma/ Normal mode analysis]: This tool allows the user to upload a query structure (or choose it from the motions database), calculate its lowest frequency Normal Mode, build the movie of this vibration and compare it with the pre-calculated flexibility regions based on either supplied B-factors or multiple structural alignment for the corresponding fold family (for single-domain queries)
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* [[Hinge Analysis]]: We have a number of resources available for hinge analysis.
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* [[Hinge Analysis]]
== Other Useful Resources ==
== Other Useful Resources ==

Revision as of 13:35, 27 June 2008

MolMovDB and Associated Tools

Contents

Databases

Servers

  • Morph Server: A web-based tool for generating and animating chemically realistic interpolations between two conformations. Now supports RNA, DNA, and multi-subunit complexes
  • Morph Server FAQ
  • Analysis of helix interactions: Tools for interface analysis of interacting helices and a database of membrane proteins
  • Normal mode analysis: This tool allows the user to upload a query structure (or choose it from the motions database), calculate its lowest frequency Normal Mode, build the movie of this vibration and compare it with the pre-calculated flexibility regions based on either supplied B-factors or multiple structural alignment for the corresponding fold family (for single-domain queries)
  • Hinge Analysis

Other Useful Resources

Publications

Personal tools